8J0F

GK tetramer with adjacent hooks at reaction state

PDB DOI: https://doi.org/10.2210/pdb8J0F/pdb
EM Map EMD-35901: EMDB EMDataResource

Classification: PLANT PROTEIN
Organism(s): Arabidopsis thaliana
Expression System: Escherichia coli BL21(DE3)
Mutation(s): No

Deposited: 2023-04-10 Released: 2024-04-17
Deposition Author(s): Zhang, T., Guo, C.J., Liu, J.L.
Funding Organization(s): National Natural Science Foundation of China (NSFC)

Experimental Data Snapshot

Method: ELECTRON MICROSCOPY
Resolution: 3.30 Å
Aggregation State: FILAMENT
Reconstruction Method: SINGLE PARTICLE

wwPDB Validation 3D Report Full Report

This is version 1.0 of the entry. See complete history.

Literature

GK tetramer with adjacent hooks at reaction state

Zhang, T., Guo, C.J., Liu, J.L.

To be published.

Macromolecule Content

Total Structure Weight: 634.53 kDa
Atom Count: 8,932
Modelled Residue Count: 1,140
Deposited Residue Count: 5,808
Unique protein chains: 1

Macromolecules

Find similar proteins by:

(by identity cutoff) | 3D Structure

Entity ID: 1
Molecule	Chains	Sequence Length	Organism	Details	Image
Delta-1-pyrroline-5-carboxylate synthase B	A [auth C] B [auth F] C [auth A] D [auth E] E [auth B] A [auth C], B [auth F], C [auth A], D [auth E], E [auth B], F [auth G], G [auth D], H	726	Arabidopsis thaliana	Mutation(s): 0 Gene Names: P5CSB, P5CS2, At3g55610, F1I16_20 EC: 2.7.2.11 (PDB Primary Data), 1.2.1.41 (PDB Primary Data)
UniProt
Find proteins for P54888 (Arabidopsis thaliana) Explore P54888 Go to UniProtKB: P54888
Entity Groups
Sequence Clusters	30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity
UniProt Group	P54888
Sequence Annotations Expand
Reference Sequence

Small Molecules

Ligands 3 Unique
ID	Chains	Name / Formula / InChI Key	2D Diagram	3D Interactions
ADP (Subject of Investigation/LOI) Query on ADP Download Ideal Coordinates CCD File SDF format, chain I [auth C] SDF format, chain L [auth A] SDF format, chain O [auth B] SDF format, chain R [auth D] MOL2 format, chain I [auth C] MOL2 format, chain L [auth A] MOL2 format, chain O [auth B] MOL2 format, chain R [auth D]	I [auth C], L [auth A], O [auth B], R [auth D]	ADENOSINE-5'-DIPHOSPHATE C₁₀ H₁₅ N₅ O₁₀ P₂ XTWYTFMLZFPYCI-KQYNXXCUSA-N		Interactions Focus chain I [auth C] Focus chain L [auth A] Focus chain O [auth B] Focus chain R [auth D] Interactions & Density Focus chain I [auth C] Focus chain L [auth A] Focus chain O [auth B] Focus chain R [auth D]
RGP (Subject of Investigation/LOI) Query on RGP Download Ideal Coordinates CCD File SDF format, chain J [auth C] SDF format, chain M [auth A] SDF format, chain P [auth B] SDF format, chain S [auth D] MOL2 format, chain J [auth C] MOL2 format, chain M [auth A] MOL2 format, chain P [auth B] MOL2 format, chain S [auth D]	J [auth C], M [auth A], P [auth B], S [auth D]	GAMMA-GLUTAMYL PHOSPHATE C₅ H₁₀ N O₇ P PJRXVIJAERNUIP-GSVOUGTGSA-N		Interactions Focus chain J [auth C] Focus chain M [auth A] Focus chain P [auth B] Focus chain S [auth D] Interactions & Density Focus chain J [auth C] Focus chain M [auth A] Focus chain P [auth B] Focus chain S [auth D]
MG (Subject of Investigation/LOI) Query on MG Download Ideal Coordinates CCD File SDF format, chain K [auth C] SDF format, chain N [auth A] SDF format, chain Q [auth B] SDF format, chain T [auth D] MOL2 format, chain K [auth C] MOL2 format, chain N [auth A] MOL2 format, chain Q [auth B] MOL2 format, chain T [auth D]	K [auth C], N [auth A], Q [auth B], T [auth D]	MAGNESIUM ION Mg JLVVSXFLKOJNIY-UHFFFAOYSA-N		Interactions Focus chain K [auth C] Focus chain N [auth A] Focus chain Q [auth B] Focus chain T [auth D] Interactions & Density Focus chain K [auth C] Focus chain N [auth A] Focus chain Q [auth B] Focus chain T [auth D]